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Apple crumble muffins with golden crumb topping in white paper liners, served on a marble surface with sliced apples in the background.

Best Apple Crumble Muffins for Breakfast or Dessert - Cozy, Crunchy, and Comforting

Prep Time 15 minutes
Cook Time 20 minutes
Total Time 35 minutes
Course Breakfast, Dessert, Snack
Cuisine American
Servings 12 Muffins

Ingredients
  

  • All-purpose flour (for both batter and crumble)
  • Granulated sugar (batter) and light brown sugar (crumble)
  • Baking powder and baking soda
  • Fine salt
  • Ground cinnamon and optional nutmeg
  • Neutral oil (canola, vegetable, or light olive)
  • Plain Greek yogurt or sour cream
  • Eggs
  • Vanilla extract
  • Apples (2 medium; Honeycrisp, Pink Lady, or Granny Smith)
  • Unsalted butter (for crumble)
  • Lemon juice (to keep apples bright; optional)
  • Coarse sugar (for sprinkling; optional)

Instructions
 

  • Prep the pan and oven: Heat oven to 375°F (190°C). Line a 12-cup muffin tin with paper liners or grease lightly.
  • Make the crumble: In a small bowl, mix 3/4 cup all-purpose flour, 1/3 cup light brown sugar, 1 teaspoon ground cinnamon, and a pinch of salt. Add 6 tablespoons melted unsalted butter and stir with a fork until clumps form. Set aside.
  • Prep the apples: Peel (optional), core, and dice 2 medium apples into small cubes (about 1/4 inch). Toss with 1 teaspoon lemon juice if you like. Pat dry with a paper towel so extra moisture doesn’t weigh down the batter.
  • Whisk dry ingredients: In a large bowl, whisk 1 3/4 cups all-purpose flour, 2 teaspoons baking powder, 1/2 teaspoon baking soda, 1/2 teaspoon salt, 1 to 1 1/2 teaspoons ground cinnamon, and a pinch of nutmeg if using.
  • Mix wet ingredients: In a separate bowl or large measuring cup, whisk 2/3 cup granulated sugar, 1/2 cup neutral oil, 2 large eggs, 3/4 cup Greek yogurt (or sour cream), and 2 teaspoons vanilla until smooth.
  • Combine wet and dry: Pour wet ingredients into the dry. Stir gently with a spatula until just combined. The batter should be thick and slightly lumpy—don’t overmix.
  • Fold in apples: Add the diced apples and fold 3–4 times to distribute. If batter seems extremely thick, add 1–2 tablespoons milk to loosen slightly.
  • Fill the cups: Divide the batter among the 12 muffin cups, filling each about 3/4 full. Sprinkle a generous layer of crumble over each muffin, pressing very lightly so it adheres. For extra sparkle, add a pinch of coarse sugar on top.
  • Bake: Bake 18–22 minutes, or until the tops are golden and a toothpick inserted into the center comes out with just a few moist crumbs (no wet batter). Rotate the pan once if your oven has hot spots.
  • Cool: Let muffins rest in the pan for 5 minutes, then move to a wire rack to cool. Enjoy warm or at room temperature.